Function that plots the F time series per species from Rceattle
Usage
plot_f(
Rceattle,
file = NULL,
model_names = NULL,
line_col = NULL,
species = NULL,
spnames = NULL,
add_ci = FALSE,
lwd = 3,
right_adj = 0,
width = 7,
height = 6.5,
minyr = NULL,
maxyr = NULL,
incl_proj = FALSE,
mod_cex = 1,
alpha = 0.4,
mod_avg = rep(FALSE, length(Rceattle)),
mse = FALSE,
OM = TRUE
)Arguments
- Rceattle
Single or list of Rceattle model objects exported from
Rceattle- file
name of a file to identified the files exported by the function.
- model_names
Names of models to be used in legend
- line_col
Colors of models to be used for line color
- species
Which species to plot e.g. c(1,4). Default = NULL plots them all
- spnames
Species names for legend
- add_ci
NOT WORKING If the confidence interval is to be added
- lwd
Line width as specified by user
- right_adj
Multiplier for to add to the right side of the figure for fitting the legend.
- width
plot width
- height
plot height
- minyr
First year to plot
- maxyr
max year to plot
- incl_proj
TRUE/FALSE, include projection years
- mod_cex
Cex of text for model name legend
- alpha
shading for confidence intervals
- mod_avg
is the list a model average? (DEPRECATED)
- mse
- OM
if mse == TRUE, use the OM (TRUE) or EM (FALSE) for plotting?