Plot biomass eaten — plot_b

Function that plots the biomass consumed trends as estimated from Rceattle. Returns and saves a figure with the biomass eaten trajectory.

Usage

plot_b_eaten(
  Rceattle,
  file = NULL,
  model_names = NULL,
  line_col = NULL,
  species = NULL,
  spnames = NULL,
  add_ci = FALSE,
  lwd = 3,
  save = FALSE,
  right_adj = 0,
  width = 7,
  height = 6.5,
  minyr = NULL,
  incl_proj = FALSE,
  mod_cex = 1,
  alpha = 0.4,
  mod_avg = rep(FALSE, length(Rceattle)),
  mse = FALSE,
  OM = TRUE
)

Arguments

Rceattle: Single or list of Rceattle model objects exported from Rceattle
file: name of a file to identified the files exported by the function.
model_names: Names of models to be used in legend
line_col: Colors of models to be used for line color
species: Which species to plot e.g. c(1,4). Default = NULL plots them all
spnames: Species names for legend
add_ci: TRUE/FALSE, includes 95 percent confidence interval
lwd: Line width as specified by user
save: Save figure to file?
right_adj: Multiplier for to add to the right side of the figure for fitting the legend.
width: Figure width in inches
height: Figure height in inches
minyr: first year to plot
incl_proj: TRUE/FALSE include projections years
mod_cex: Cex of text for model name legend
alpha: Shading for confidence intervals
mod_avg: TRUE/FALSE
mse: Is an MSE object from load_mse or run_mse
OM: if mse == TRUE, use the OM (TRUE) or EM (FALSE) for plotting?