Encode a linkage table into TMB-friendly parallel vectors — encode_linkage_for_tmb • Rceattle

Encode a linkage table into TMB-friendly parallel vectors

Usage

encode_linkage_for_tmb(table, X)

Arguments

table: an Rceattle_linkage_table (typically the output of pool_linkages()).
X: the global design matrix from pool_linkages() (passed through unchanged so callers can stash it alongside).

Value

A named list with components:

n_linkage: integer(1). Number of coefficients (nrow(table)).
linkage_process, linkage_param, linkage_species, linkage_sex, linkage_age_bin, linkage_X_col, linkage_link, linkage_prior_family: Parallel integer(n_linkage) vectors.
linkage_prior_p1, linkage_prior_p2: Parallel numeric(n_linkage) vectors.
linkage_X: The design matrix as passed in.
linkage_design_names: character colnames of linkage_X.