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Main function to construct the TMB map argument for CEATTLE

Source: R/2-build_map.R
build_map.Rd

Orchestrates the building of the TMB map object by calling specialized helper functions for each parameter block (Recruitment, M1, Predation, Selectivity, Catchability, etc.).

Usage

build_map(
  data_list,
  params,
  debug = FALSE,
  random_rec = FALSE,
  random_sel = FALSE
)

Arguments

data_list

an Rceattle data_list

params

A parameter list created from build_params.

debug

Logical. If TRUE, sets all map values to NA except the dummy parameter, running the model without parameter estimation.

random_rec

Logical. If TRUE, treats recruitment deviations as random effects, meaning the variance parameter (R_log_sd) is estimated.

random_sel

Logical. If TRUE, treats selectivity deviations as random effects, meaning the variance parameter (sel_dev_log_sd) is estimated.

Value

A list containing the factorized TMB map (mapFactor) and the original map matrix/array list (mapList).